Accomplishments and discoveries from VGN students and faculty

Publications

Facility Supported Publications:

  1. Wood M, Rymarchyk S, Zheng S, Cen Y (2018) Trichostatin A inhibits deacetylation of histone H3 and p53 by SIRT6. Arch Biochem Biophys 638: 8-17. PMCID: 5762261
  2. van der Velden JL, Wagner DE, Lahue KG, Abdalla ST, Lam YW, Weiss DJ, Janssen-Heininger YMW (2018) TGF-beta1-induced deposition of provisional extracellular matrix by tracheal basal cells promotes epithelial-to-mesenchymal transition in a JNK1-dependent manner. Am J Physiol Lung Cell Mol Physiol.
  3. Munson P, Lam YW, MacPherson M, Beuschel S, Shukla A (2018) Mouse serum exosomal proteomic signature in response to asbestos exposure. J Cell Biochem 119: 6266-6273.
  4. Munson P, Lam YW, Dragon J, MacPherson M, Shukla A (2018) Exosomes from asbestos-exposed cells modulate gene expression in mesothelial cells. FASEB J: fj201701291RR.
  5. Ziegler CM, Eisenhauer P, Kelly JA, Dang LN, Beganovic V, Bruce EA, King BR, Shirley DJ, Weir ME, Ballif BA, Botten J (2017) A proteomic survey of Junin virus interactions with human proteins reveals host factors required for arenavirus replication. J Virol. PMCID: 5790945
  6. Thammahong A, Caffrey-Card AK, Dhingra S, Obar JJ, Cramer RA (2017) Aspergillus fumigatus Trehalose-Regulatory Subunit Homolog Moonlights To Mediate Cell Wall Homeostasis through Modulation of Chitin Synthase Activity. MBio 8. PMCID: 5405227
  7. Tacoma R, Gelsinger SL, Lam YW, Scuderi RA, Ebenstein DB, Heinrichs AJ, Greenwood SL (2017) Exploration of the bovine colostrum proteome and effects of heat treatment time on colostrum protein profile. J Dairy Sci 100: 9392-9401.
  8. Tacoma R, Fields J, Ebenstein DB, Lam YW, Greenwood SL (2017) Ratio of dietary rumen degradable protein to rumen undegradable protein affects nitrogen partitioning but does not affect the bovine milk proteome produced by mid-lactation Holstein dairy cows. J Dairy Sci 100: 7246-7261.
  9. St Clair RM, Emerson SE, D'Elia KP, Weir ME, Schmoker AM, Ebert AM, Ballif BA (2017) Fyn-dependent phosphorylation of PlexinA1 and PlexinA2 at conserved tyrosines is essential for zebrafish eye development. FEBS J.
  10. Schmoker AM, Weinert JL, Kellett KJ, Johnson HE, Joy RM, Weir ME, Ebert AM, Ballif BA (2017) Dynamic multi-site phosphorylation by Fyn and Abl drives the interaction between CRKL and the novel scaffolding receptors DCBLD1 and DCBLD2. Biochem J.
  11. Prakash A, Moharana K, Wallace SS, Doublie S (2017) Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase. Nucleic Acids Res 45: 2897-2909. PMCID: 5389659
  12. Northrop AC, Brooks R, Ellison AM, Gotelli NJ, Ballif BA (2017) Environmental proteomics reveals taxonomic and functional changes in an enriched aquatic ecosystem. Ecosphere 8. PMCID: 5697771
  13. Liu Y, Wang BX, Li J, Song ZQ, Lu BG, Chi M, Yang B, Liu JB, Lam YW, Li JX, Xu DY (2017) Salt-response analysis in two rice cultivars at seedling stage. Acta Physiologiae Plantarum 39.
  14. Li S, Diego-Limpin PA, Bajrami B, Keshipeddy S, Lam YW, Deng B, Farrokhi V, McShane AJ, Nemati R, Howell AR, Yao X (2017) Scaling Proteome-Wide Reactions of Activity-Based Probes. Anal Chem 89: 6295-6299.
  15. Lee CW, Stankowski JN, Chew J, Cook CN, Lam YW, Almeida S, Carlomagno Y, Lau KF, Prudencio M, Gao FB, Bogyo M, Dickson DW, Petrucelli L (2017) The lysosomal protein cathepsin L is a progranulin protease. Mol Neurodegener 12: 55. PMCID: 5526245
  16. King BR, Hershkowitz D, Eisenhauer PL, Weir ME, Ziegler CM, Russo J, Bruce EA, Ballif BA, Botten J (2017) A Map of the Arenavirus Nucleoprotein-Host Protein Interactome Reveals that Junin Virus Selectively Impairs the Antiviral Activity of Double-Stranded RNA-Activated Protein Kinase (PKR). J Virol 91. PMCID: 5512243
  17. Keller JI, Ballif BA, St Clair RM, Vincent JJ, Monroy MC, Stevens L (2017) Chagas disease vector blood meal sources identified by protein mass spectrometry. PLoS One 12: e0189647. PMCID: 5726658
  18. Emerson SE, St Clair RM, Waldron AL, Bruno SR, Duong A, Driscoll HE, Ballif BA, McFarlane S, Ebert AM (2017) Identification of target genes downstream of semaphorin6A/PlexinA2 signaling in zebrafish. Dev Dyn 246: 539-549.
  19. Corwin T, Woodsmith J, Apelt F, Fontaine JF, Meierhofer D, Helmuth J, Grossmann A, Andrade-Navarro MA, Ballif BA, Stelzl U (2017) Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate. Cell Syst 5: 128-139 e124.
  20. Ziegler CM, Eisenhauer P, Bruce EA, Weir ME, King BR, Klaus JP, Krementsov DN, Shirley DJ, Ballif BA, Botten J (2016) The Lymphocytic Choriomeningitis Virus Matrix Protein PPXY Late Domain Drives the Production of Defective Interfering Particles. PLoS Pathog 12: e1005501. PMCID: 4806877
  21. Ziegler CM, Eisenhauer P, Bruce EA, Beganovic V, King BR, Weir ME, Ballif BA, Botten J (2016) A novel phosphoserine motif in the LCMV matrix protein Z regulates the release of infectious virus and defective interfering particles. J Gen Virol 97: 2084-2089.
  22. Weir ME, Mann JE, Corwin T, Fulton ZW, Hao JM, Maniscalco JF, Kenney MC, Roman Roque KM, Chapdelaine EF, Stelzl U, Deming PB, Ballif BA, Hinkle KL (2016) Novel autophosphorylation sites of Src family kinases regulate kinase activity and SH2 domain-binding capacity. FEBS Lett 590: 1042-1052. PMCID: 4844773
  23. Tang Q, Billington N, Krementsova EB, Bookwalter CS, Lord M, Trybus KM (2016) A single-headed fission yeast myosin V transports actin in a tropomyosin-dependent manner. J Cell Biol 214: 167-179. Jul 18 PMCID: 4949448
  24. Tacoma R, Fields J, Ebenstein DB, Lam YW, Greenwood SL (2016) Comparative proteomics dataset of skimmed milk samples from Holstein and Jersey dairy cattle. Data Brief 6: 843-846. PMCID: 4749939
  25. Prakash A, Cao VB, Doublie S (2016) Phosphorylation Sites Identified in the NEIL1 DNA Glycosylase Are Potential Targets for the JNK1 Kinase. PLoS One 11: e0157860. PMCID: 4982613
  26. Platz J, Bonenfant NR, Uhl FE, Coffey AL, McKnight T, Parsons C, Sokocevic D, Borg ZD, Lam YW, Deng B, Fields JG, DeSarno M, Loi R, Hoffman AM, Bianchi J, Dacken B, Petersen T, Wagner DE, Weiss DJ (2016) Comparative Decellularization and Recellularization of Wild-Type and Alpha 1,3 Galactosyltransferase Knockout Pig Lungs: A Model for Ex Vivo Xenogeneic Lung Bioengineering and Transplantation. Tissue Eng Part C Methods 22: 725-739. PMCID: 4991572
  27. Lemas D, Lekkas P, Ballif BA, Vigoreaux JO (2016) Intrinsic disorder and multiple phosphorylations constrain the evolution of the flightin N-terminal region. J Proteomics 135: 191-200. PMCID: 4762717
  28. Krishnamurthy S, Deng B, Del Rio R, Buchholz KR, Treeck M, Urban S, Boothroyd J, Lam YW, Ward GE (2016) Not a Simple Tether: Binding of Toxoplasma gondii AMA1 to RON2 during Invasion Protects AMA1 from Rhomboid-Mediated Cleavage and Leads to Dephosphorylation of Its Cytosolic Tail. MBio 7. PMCID: 5021801
  29. Cheerathodi M, Avci NG, Guerrero PA, Tang LK, Popp J, Morales JE, Chen Z, Carnero A, Lang FF, Ballif BA, Rivera GM, McCarty JH (2016) The Cytoskeletal Adapter Protein Spinophilin Regulates Invadopodia Dynamics and Tumor Cell Invasion in Glioblastoma. Mol Cancer Res 14: 1277-1287. PMCID: 5136334
  30. Caballero MC, Alonso AM, Deng B, Attias M, de Souza W, Corvi MM (2016) Identification of new palmitoylated proteins in Toxoplasma gondii. Biochim Biophys Acta 1864: 400-408. PMCID: 4857766
  31. Yano J, Valentine MS, Van Houten JL (2015) Novel Insights into the Development and Function of Cilia Using the Advantages of the Paramecium Cell and Its Many Cilia. Cells 4: 297-314. PMCID: 4588038
  32. Xie Y, Jin Y, Merenick BL, Ding M, Fetalvero KM, Wagner RJ, Mai A, Gleim S, Tucker DF, Birnbaum MJ, Ballif BA, Luciano AK, Sessa WC, Rzucidlo EM, Powell RJ, Hou L, Zhao H, Hwa J, Yu J, Martin KA (2015) Phosphorylation of GATA-6 is required for vascular smooth muscle cell differentiation after mTORC1 inhibition. Sci Signal 8: ra44. PMCID: 4560350
  33. Woodward M, Previs MJ, Mader TJ, Debold EP (2015) Modifications of myofilament protein phosphorylation and function in response to cardiac arrest induced in a swine model. Front Physiol 6: 199. PMCID: 4503891
  34. Tacoma R, Fields J, Ebenstein DB, Lam YW, Greenwood SL (2015) Characterization of the bovine milk proteome in early-lactation Holstein and jersey breeds of dairy cows. J Proteomics.
  35. Smith KP, Fields JG, Voogt RD, Deng B, Lam YW, Mintz KP (2015) Alteration in abundance of specific membrane proteins of Aggregatibacter actinomycetemcomitans is attributed to deletion of the inner membrane protein MorC. Proteomics.
  36. Schmidts M, Hou Y, Cortes CR, Mans DA, Huber C, Boldt K, Patel M, van Reeuwijk J, Plaza JM, van Beersum SE, Yap ZM, Letteboer SJ, Taylor SP, Herridge W, Johnson CA, Scambler PJ, Ueffing M, Kayserili H, Krakow D, King SM, Uk10K, Beales PL, Al-Gazali L, Wicking C, Cormier-Daire V, Roepman R, Mitchison HM, Witman GB (2015) TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport. Nat Commun 6: 7074. PMCID: 4468853
  37. Perlini LE, Szczurkowska J, Ballif BA, Piccini A, Sacchetti S, Giovedi S, Benfenati F, Cancedda L (2015) Synapsin III acts downstream of semaphorin 3A/CDK5 signaling to regulate radial migration and orientation of pyramidal neurons in vivo. Cell Rep 11: 234-248. PMCID: 4405008
  38. Flemer S, Jr. (2015) Fmoc-Sec(Xan)-OH: synthesis and utility of Fmoc selenocysteine SPPS derivatives with acid-labile sidechain protection. J Pept Sci 21: 53-59.
  39. Daniels G, Ballif BA, Helias V, Saison C, Grimsley S, Mannessier L, Hustinx H, Lee E, Cartron JP, Peyrard T, Arnaud L (2015) Lack of the nucleoside transporter ENT1 results in the Augustine-null blood type and ectopic mineralization. Blood 125: 3651-3654. PMCID: 4458803
  40. Cunniff B, Newick K, Nelson KJ, Wozniak AN, Beuschel S, Leavitt B, Bhave A, Butnor K, Koenig A, Chouchani ET, James AM, Haynes AC, Lowther WT, Murphy MP, Shukla A, Heintz NH (2015) Disabling Mitochondrial Peroxide Metabolism via Combinatorial Targeting of Peroxiredoxin 3 as an Effective Therapeutic Approach for Malignant Mesothelioma. PLoS One 10: e0127310. PMCID: 4444329
  41. Clemments AM, Botella P, Landry CC (2015) Protein Adsorption From Biofluids on Silica Nanoparticles: Corona Analysis as a Function of Particle Diameter and Porosity. ACS Appl Mater Interfaces 7: 21682-21689.
  42. Cheerathodi M, Vincent JJ, Ballif BA (2015) Quantitative comparison of CrkL-SH3 binding proteins from embryonic murine brain and liver: Implications for developmental signaling and the quantification of protein species variants in bottom-up proteomics. J Proteomics 125: 104-111. PMCID: 4461459
  43. Awata J, Song K, Lin J, King SM, Sanderson MJ, Nicastro D, Witman GB (2015) DRC3 connects the N-DRC to dynein g to regulate flagellar waveform. Mol Biol Cell 26: 2788-2800. PMCID: 4571338
  44. Arnaud L, Kelley LP, Helias V, Cartron JP, Ballif BA (2015) SMIM1 is a type II transmembrane phosphoprotein and displays the Vel blood group antigen at its carboxyl-terminus. FEBS Lett 589: 3624-3630. PMCID: 4664579
  45. Wagner DE, Bonenfant NR, Sokocevic D, DeSarno MJ, Borg ZD, Parsons CS, Brooks EM, Platz JJ, Khalpey ZI, Hoganson DM, Deng B, Lam YW, Oldinski RA, Ashikaga T, Weiss DJ (2014) Three-dimensional scaffolds of acellular human and porcine lungs for high throughput studies of lung disease and regeneration. Biomaterials 35: 2664-2679.
  46. Wagner DE, Bonenfant NR, Parsons CS, Sokocevic D, Brooks EM, Borg ZD, Lathrop MJ, Wallis JD, Daly AB, Lam YW, Deng B, Desarno MJ, Ashikaga T, Loi R, Weiss DJ (2014) Comparative decellularization and recellularization of normal versus emphysematous human lungs. Biomaterials 35: 3281-3297.
  47. Tang Q, Andenmatten N, Triana MA, Deng B, Meissner M, Moreno SN, Ballif BA, Ward GE (2014) Calcium-dependent phosphorylation alters Class XIVa myosin function in the protozoan parasite Toxoplasma gondii. Mol Biol Cell.
  48. Smith KP, Fields JG, Voogt RD, Deng B, Lam YW, Mintz KP (2014) The cell envelope proteome of Aggregatibacter actinomycetemcomitans. Mol Oral Microbiol. PMCID: 4305030
  49. Rizzo AA, Suhanovsky MM, Baker ML, Fraser LC, Jones LM, Rempel DL, Gross ML, Chiu W, Alexandrescu AT, Teschke CM (2014) Multiple Functional Roles of the Accessory I-Domain of Bacteriophage P22 Coat Protein Revealed by NMR Structure and CryoEM Modeling. Structure 22: 830-841. PMCID: 4068711
  50. Picariello T, Valentine MS, Yano J, Van Houten J (2014) Reduction of meckelin leads to general loss of cilia, ciliary microtubule misalignment and distorted cell surface organization. Cilia 3: 2.
  51. Miller RW, Duncan AK, Schneebeli ST, Gray DL, Whalley AC (2014) Synthesis and structural data of tetrabenzo[8]circulene. Chemistry 20: 3705-3711.
  52. Machamer NK, Liu X, Waters SP (2014) A new entry to azomethine ylides from allylic amines and glyoxals: shifting the reliance on amino ester precursors. Org Lett 16: 4996-4999. PMCID: 4184444
  53. Lopez-Camacho C, van Wijnen AJ, Lian JB, Stein JL, Stein GS (2014) Core Binding Factor beta (CBFbeta) Is Retained in the Midbody During Cytokinesis. J Cell Physiol 229: 1466-1474. PMCID: 4077906
  54. Leung JM, Tran F, Pathak RB, Poupart S, Heaslip AT, Ballif BA, Westwood NJ, Ward GE (2014) Identification of T. gondii Myosin Light Chain-1 as a Direct Target of TachypleginA-2, a Small-Molecule Inhibitor of Parasite Motility and Invasion. PLoS One 9: e98056. PMCID: 4043638
  55. Jabre ND, Watanabe T, Brewer M (2014) Formal and total synthesis of (+/-)-cycloclavine. Tetrahedron Lett 56: 197-199. PMCID: 3915717
  56. Hristova M, Veith C, Habibovic A, Lam YW, Deng B, Geiszt M, Janssen-Heininger YM, van der Vliet A (2014) Identification of DUOX1-dependent redox signaling through protein S-glutathionylation in airway epithelial cells. Redox Biol 2: 436-446. PMCID: 3949091
  57. Galan JA, Geraghty KM, Lavoie G, Kanshin E, Tcherkezian J, Calabrese V, Jeschke GR, Turk BE, Ballif BA, Blenis J, Thibault P, Roux PP (2014) Phosphoproteomic analysis identifies the tumor suppressor PDCD4 as a RSK substrate negatively regulated by 14-3-3. Proc Natl Acad Sci U S A 111: E2918-2927. PMCID: 4115529
  58. Doubleday PF, Ballif BA (2014) Developmentally-Dynamic Murine Brain Proteomes and Phosphoproteomes Revealed by Quantitative Proteomics. Proteomes 2: 197-207. PMCID: 4146493
  59. Deng L, Kabeche R, Wang N, Wu JQ, Moseley JB (2014) Megadalton-node assembly by binding of Skb1 to the membrane anchor Slf1. Mol Biol Cell 25: 2660-2668. PMCID: 4148255
  60. Cherian S, Wai Lam Y, McDaniels I, Struziak M, Delay RJ (2014) Estradiol rapidly modulates odor responses in mouse vomeronasal sensory neurons. Neuroscience 269: 43-58.
  61. Bayir A, Brewer M (2014) Fragmentation of bicyclic gamma-silyloxy-beta-hydroxy-alpha-diazolactones as an approach to ynolides. J Org Chem 79: 6037-6046. PMCID: 4084849
  62. Ballok AE, Filkins LM, Bomberger JM, Stanton BA, O'Toole GA (2014) Epoxide-mediated differential packaging of Cif and other virulence factors into outer membrane vesicles. J Bacteriol 196: 3633-3642. PMCID: 4187700
  63. Awata J, Takada S, Standley C, Lechtreck KF, Bellve KD, Pazour GJ, Fogarty KE, Witman GB (2014) NPHP4 controls ciliary trafficking of membrane proteins and large soluble proteins at the transition zone. J Cell Sci 127: 4714-4727. PMCID: 4215714
  64. Angel SO, Figueras MJ, Alomar ML, Echeverria PC, Deng B (2014) Toxoplasma gondii Hsp90: potential roles in essential cellular processes of the parasite. Parasitology: 1-10.
  65. Alayev A, Doubleday PF, Berger SM, Ballif BA, Holz MK (2014) Phosphoproteomics reveals resveratrol-dependent inhibition of Akt/mTORC1/S6K1 signaling. J Proteome Res 13: 5734-5742. PMCID: 4258159
  66. Zhang Z, Giampa GM, Draghici C, Huang Q, Brewer M (2013) Synthesis of demissidine by a ring fragmentation 1,3-dipolar cycloaddition approach. Org Lett 15: 2100-2103. PMCID: 3671602
  67. Yano J, Rajendran A, Valentine MS, Saha M, Ballif BA, Van Houten JL (2013) Proteomic analysis of the cilia membrane of Paramecium tetraurelia. J Proteomics 78: 113-122.
  68. Torde RG, Therrien AJ, Shortreed MR, Smith LM, Lamos SM (2013) Multiplexed analysis of cage and cage free chicken egg fatty acids using stable isotope labeling and mass spectrometry. Molecules 18: 14977-14988.
  69. Syed K, Porollo A, Lam YW, Grimmett PE, Yadav JS (2013) A catalytically versatile fungal P450 monooxygenase (CYP63A2) capable of oxidizing higher polycyclic aromatic hydrocarbons, alkylphenols, and alkanes. Appl Environ Microbiol.
  70. Suhanovsky MM, Teschke CM (2013) An intramolecular chaperone inserted in bacteriophage P22 coat protein mediates its chaperonin-independent folding. J Biol Chem 288: 33772-33783. PMCID: 3837121
  71. Sokocevic D, Bonenfant NR, Wagner DE, Borg ZD, Lathrop MJ, Lam YW, Deng B, Desarno MJ, Ashikaga T, Loi R, Hoffman AM, Weiss DJ (2013) The effect of age and emphysematous and fibrotic injury on the re-cellularization of de-cellularized lungs. Biomaterials 34: 3256-3269.
  72. Purmessur D, Guterl CC, Cho SK, Cornejo MC, Lam YW, Ballif BA, Laudier JC, Iatridis JC (2013) Dynamic pressurization induces transition of notochordal cells to a mature phenotype while retaining production of important patterning ligands from development. Arthritis Res Ther 15: R122.
  73. Miller MS, Bedrin NG, Callahan DM, Previs MJ, Jennings ME, 2nd, Ades PA, Maughan DW, Palmer BM, Toth MJ (2013) Age-related slowing of myosin actin cross-bridge kinetics is sex specific and predicts decrements in whole skeletal muscle performance in humans. J Appl Physiol (1985) 115: 1004-1014. PMCID: 3798822
  74. Krudysz-Amblo J, Jennings ME, 2nd, Knight T, Matthews DE, Mann KG, Butenas S (2013) Disulfide reduction abolishes tissue factor cofactor function. Biochim Biophys Acta 1830: 3489-3496. PMCID: 3674504
  75. Klaus JP, Eisenhauer P, Russo J, Mason AB, Do D, King B, Taatjes D, Cornillez-Ty C, Boyson JE, Thali M, Zheng C, Liao L, Yates JR, 3rd, Zhang B, Ballif BA, Botten JW (2013) The intracellular cargo receptor ERGIC-53 is required for the production of infectious arenavirus, coronavirus, and filovirus particles. Cell Host Microbe 14: 522-534.
  76. Fellows A, Deng B, Mierke DF, Robey RB, Nichols RC (2013) Peptides modeled on the RGG domain of AUF1/hnRNP-D regulate 3' UTR-dependent gene expression. Int Immunopharmacol 17: 132-141. PMCID: 3711235
  77. Choi S, Aljakna A, Srivastava U, Peterson BR, Deng B, Prat A, Korstanje R (2013) Decreased APOE-containing HDL subfractions and cholesterol efflux capacity of serum in mice lacking Pcsk9. Lipids Health Dis 12: 112. PMCID: 3751695
  78. Cheng X, Waters SP (2013) Pyridone annulation via tandem Curtius rearrangement/6pi-electrocyclization: total synthesis of (-)-lyconadin C. Org Lett 15: 4226-4229. PMCID: 3788595
  79. Bonenfant NR, Sokocevic D, Wagner DE, Borg ZD, Lathrop MJ, Lam YW, Deng B, Desarno MJ, Ashikaga T, Loi R, Weiss DJ (2013) The effects of storage and sterilization on de-cellularized and re-cellularized whole lung. Biomaterials 34: 3231-3245.
  80. Bior BK, Ballif BA (2013) Dab1 stabilizes its interaction with Cin85 by suppressing Cin85 phosphorylation at serine 587. FEBS Lett 587: 60-66. PMCID: 3532509
  81. Bercovici DA, Ogilvie JM, Tsvetkov N, Brewer M (2013) Intramolecular polar [4( plus sign in circle)+2] cycloadditions of aryl-1-aza-2-azoniaallene salts: unprecedented reactivity leading to polycyclic protonated azomethine imines. Angew Chem Int Ed Engl 52: 13338-13341.
  82. Ballif BA, Helias V, Peyrard T, Menanteau C, Saison C, Lucien N, Bourgouin S, Le Gall M, Cartron JP, Arnaud L (2013) Disruption of SMIM1 causes the Vel- blood type. EMBO Mol Med 5: 751-761. PMCID: 3662317
  83. Aten TM, Redmond MM, Weaver SO, Love CC, Joy RM, Lapp AS, Rivera OD, Hinkle KL, Ballif BA (2013) Tyrosine phosphorylation of the orphan receptor ESDN/DCBLD2 serves as a scaffold for the signaling adaptor CrkL. FEBS Lett 587: 2313-2318. PMCID: 3759512
  84. Aranha Potter R, Bowser AM, Yang Y, Madalengoitia JS, Ziller JW (2013) Structure-reactivity relationships of zwitterionic 1,3-diaza-Claisen rearrangements. J Org Chem 78: 11772-11782.
  85. Zhang A, Petrov KO, Hyun ER, Liu Z, Gerber SA, Myers LC (2012) The Tlo proteins are stoichiometric components of Candida albicans mediator anchored via the Med3 subunit. Eukaryot Cell 11: 874-884. PMCID: 3416505
  86. Weith A, Sadayappan S, Gulick J, Previs MJ, Vanburen P, Robbins J, Warshaw DM (2012) Unique single molecule binding of cardiac myosin binding protein-C to actin and phosphorylation-dependent inhibition of actomyosin motility requires 17 amino acids of the motif domain. J Mol Cell Cardiol 52: 219-227. PMCID: 3246064
  87. Wallis JM, Borg ZD, Daly AB, Deng B, Ballif BA, Allen GB, Jaworski DM, Weiss DJ (2012) Comparative assessment of detergent-based protocols for mouse lung de-cellularization and re-cellularization. Tissue Eng Part C Methods 18: 420-432. PMCID: 3358122
  88. Valentine MS, Rajendran A, Yano J, Weeraratne SD, Beisson J, Cohen J, Koll F, Van Houten J (2012) Paramecium BBS genes are key to presence of channels in Cilia. Cilia 1: 16. PMCID: 3556005
  89. Tang G, Ruiz T, Mintz KP (2012) O-polysaccharide glycosylation is required for stability and function of the collagen adhesin EmaA of Aggregatibacter actinomycetemcomitans. Infect Immun 80: 2868-2877. PMCID: 3434563
  90. Tang G, Kawai T, Komatsuzawa H, Mintz KP (2012) Lipopolysaccharides mediate leukotoxin secretion in Aggregatibacter actinomycetemcomitans. Mol Oral Microbiol 27: 70-82. PMCID: 3296970
  91. Saison C, Peyrard T, Landre C, Ballif BA, Schlosser KA, Dettori I, Chicheportiche C, Nemeth P, Cartron JP, Arnaud L (2012) A new AQP1 null allele identified in a Gypsy woman who developed an anti-CO3 during her first pregnancy. Vox Sang 103: 137-144.
  92. Saison C, Helias V, Ballif BA, Peyrard T, Puy H, Miyazaki T, Perrot S, Vayssier-Taussat M, Waldner M, Le Pennec PY, Cartron JP, Arnaud L (2012) Null alleles of ABCG2 encoding the breast cancer resistance protein define the new blood group system Junior. Nat Genet 44: 174-177.
  93. Saha M, Carriere A, Cheerathodi M, Zhang X, Lavoie G, Rush J, Roux PP, Ballif BA (2012) RSK phosphorylates SOS1 creating 14-3-3-docking sites and negatively regulating MAPK activation. Biochem J 447: 159-166.
  94. Previs MJ, Beck Previs S, Gulick J, Robbins J, Warshaw DM (2012) Molecular mechanics of cardiac myosin-binding protein C in native thick filaments. Science 337: 1215-1218. PMCID: 3561468
  95. Jabre ND, Brewer M (2012) Stereoelectronic effects in the fragmentation of gamma-silyloxy-beta-hydroxy-alpha-diazocarbonyl compounds. J Org Chem 77: 9910-9914. PMCID: 3489280
  96. Hristova M, Spiess PC, Kasahara DI, Randall MJ, Deng B, van der Vliet A (2012) The tobacco smoke component, acrolein, suppresses innate macrophage responses by direct alkylation of c-Jun N-terminal kinase. Am J Respir Cell Mol Biol 46: 23-33. PMCID: 3262655
  97. Helias V, Saison C, Ballif BA, Peyrard T, Takahashi J, Takahashi H, Tanaka M, Deybach JC, Puy H, Le Gall M, Sureau C, Pham BN, Le Pennec PY, Tani Y, Cartron JP, Arnaud L (2012) ABCB6 is dispensable for erythropoiesis and specifies the new blood group system Langereis. Nat Genet 44: 170-173.
  98. Gotelli NJ, Ellison AM, Ballif BA (2012) Environmental proteomics, biodiversity statistics and food-web structure. Trends Ecol Evol 27: 436-442. PMCID: 3392467
  99. Goswami T, Li X, Smith AM, Luderowski EM, Vincent JJ, Rush J, Ballif BA (2012) Comparative phosphoproteomic analysis of neonatal and adult murine brain. Proteomics 12: 2185-2189.
  100. Daly AB, Wallis JM, Borg ZD, Bonvillain RW, Deng B, Ballif BA, Jaworski DM, Allen GB, Weiss DJ (2012) Initial binding and recellularization of decellularized mouse lung scaffolds with bone marrow-derived mesenchymal stromal cells. Tissue Eng Part A 18: 1-16.
  101. Caldwell GB, Howe AK, Nickl CK, Dostmann WR, Ballif BA, Deming PB (2012) Direct modulation of the protein kinase A catalytic subunit alpha by growth factor receptor tyrosine kinases. J Cell Biochem 113: 39-48. PMCID: 3245341
  102. Anjum R, Pae E, Blenis J, Ballif BA (2012) TPCK inhibits AGC kinases by direct activation loop adduction at phenylalanine-directed cysteine residues. FEBS Lett 586: 3471-3476.
  103. Al-Bataineh NQ, Brewer M (2012) Iodine(III)-mediated bicyclic diazenium salt formation. Tetrahedron Letters 53: 5411-5413.
  104. Spiess PC, Deng B, Hondal RJ, Matthews DE, van der Vliet A (2011) Proteomic profiling of acrolein adducts in human lung epithelial cells. J Proteomics 74: 2380-2394. PMCID: 3196826
  105. Purmessur D, Schek RM, Abbott RD, Ballif BA, Godburn KE, Iatridis JC (2011) Notochordal conditioned media from tissue increases proteoglycan accumulation and promotes a healthy nucleus pulposus phenotype in human mesenchymal stem cells. Arthritis Res Ther 13: R81. PMCID: 3218891
  106. Palmer BM, Sadayappan S, Wang Y, Weith AE, Previs MJ, Bekyarova T, Irving TC, Robbins J, Maughan DW (2011) Roles for cardiac MyBP-C in maintaining myofilament lattice rigidity and prolonging myosin cross-bridge lifetime. Biophys J 101: 1661-1669. PMCID: 3183797
  107. Minajigi A, Deng B, Francklyn CS (2011) Fidelity escape by the unnatural amino acid beta-hydroxynorvaline: an efficient substrate for Escherichia coli threonyl-tRNA synthetase with toxic effects on growth. Biochemistry 50: 1101-1109. PMCID: 3063515
  108. Mendoza MC, Er EE, Zhang W, Ballif BA, Elliott HL, Danuser G, Blenis J (2011) ERK-MAPK drives lamellipodia protrusion by activating the WAVE2 regulatory complex. Mol Cell 41: 661-671. PMCID: 3078620
  109. Gotelli NJ, Smith AM, Ellison AM, Ballif BA (2011) Proteomic characterization of the major arthropod associates of the carnivorous pitcher plant Sarracenia purpurea. Proteomics 11: 2354-2358. PMCID: 3517077
  110. Cheerathodi M, Ballif BA (2011) Identification of CrkL-SH3 binding proteins from embryonic murine brain: implications for Reelin signaling during brain development. J Proteome Res 10: 4453-4462. PMCID: 3189288
  111. Bokiej M, Livermore AT, Harris AW, Onishi AC, Sandwick RK (2011) Ribose sugars generate internal glycation cross-links in horse heart myoglobin. Biochem Biophys Res Commun 407: 191-196. PMCID: 3086664
  112. Tang G, Mintz KP (2010) Glycosylation of the collagen adhesin EmaA of Aggregatibacter actinomycetemcomitans is dependent upon the lipopolysaccharide biosynthetic pathway. J Bacteriol 192: 1395-1404. PMCID: 2820841
  113. Schalm SS, Ballif BA, Buchanan SM, Phillips GR, Maniatis T (2010) Phosphorylation of protocadherin proteins by the receptor tyrosine kinase Ret. Proc Natl Acad Sci U S A 107: 13894-13899. PMCID: 2922223
  114. Rumora AE, Steere AN, Ramsey JE, Knapp AM, Ballif BA, Kelm RJ, Jr. (2010) Isolation and characterization of the core single-stranded DNA-binding domain of purine-rich element binding protein B (Purbeta). Biochem Biophys Res Commun 400: 340-345. PMCID: 2957832
  115. Roskens VA, Carpenter JM, Pickett KM, Ballif BA (2010) Preservation of field samples for enzymatic and proteomic characterization: analysis of proteins from the trophallactic fluid of hornets and yellowjackets. J Proteome Res 9: 5484-5491. PMCID: 2948579
  116. Roberts-Galbraith RH, Ohi MD, Ballif BA, Chen JS, McLeod I, McDonald WH, Gygi SP, Yates JR, 3rd, Gould KL (2010) Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site. Mol Cell 39: 86-99. PMCID: 2916701
  117. Krudysz-Amblo J, Jennings ME, 2nd, Mann KG, Butenas S (2010) Carbohydrates and activity of natural and recombinant tissue factor. J Biol Chem 285: 3371-3382. PMCID: 2823427
  118. Knowlton ML, Selfors LM, Wrobel CN, Gu TL, Ballif BA, Gygi SP, Polakiewicz R, Brugge JS (2010) Profiling Y561-dependent and -independent substrates of CSF-1R in epithelial cells. PLoS One 5: e13587. PMCID: 2964295
  119. Heaslip AT, Leung JM, Carey KL, Catti F, Warshaw DM, Westwood NJ, Ballif BA, Ward GE (2010) A small-molecule inhibitor of T. gondii motility induces the posttranslational modification of myosin light chain-1 and inhibits myosin motor activity. PLoS Pathog 6: e1000720. PMCID: 2800044
  120. Foster KG, Acosta-Jaquez HA, Romeo Y, Ekim B, Soliman GA, Carriere A, Roux PP, Ballif BA, Fingar DC (2010) Regulation of mTOR complex 1 (mTORC1) by raptor Ser863 and multisite phosphorylation. J Biol Chem 285: 80-94. PMCID: 2804229
  121. Echeverria PC, Figueras MJ, Vogler M, Kriehuber T, de Miguel N, Deng B, Dalmasso MC, Matthews DE, Matrajt M, Haslbeck M, Buchner J, Angel SO (2010) The Hsp90 co-chaperone p23 of Toxoplasma gondii: Identification, functional analysis and dynamic interactome determination. Mol Biochem Parasitol 172: 129-140. PMCID: 2990952
  122. Buel GR, Rush J, Ballif BA (2010) Fyn promotes phosphorylation of collapsin response mediator protein 1 at tyrosine 504, a novel, isoform-specific regulatory site. J Cell Biochem 111: 20-28.
  123. Lechtreck KF, Johnson EC, Sakai T, Cochran D, Ballif BA, Rush J, Pazour GJ, Ikebe M, Witman GB (2009) The Chlamydomonas reinhardtii BBSome is an IFT cargo required for export of specific signaling proteins from flagella. J Cell Biol 187: 1117-1132. PMCID: 2806276
  124. Krudysz-Amblo J, Parhami-Seren B, Butenas S, Brummel-Ziedins KE, Gomperts ED, Rivard GE, Mann KG (2009) Quantitation of anti-factor VIII antibodies in human plasma. Blood 113: 2587-2594. PMCID: 2656278
  125. Acosta-Jaquez HA, Keller JA, Foster KG, Ekim B, Soliman GA, Feener EP, Ballif BA, Fingar DC (2009) Site-specific mTOR phosphorylation promotes mTORC1-mediated signaling and cell growth. Mol Cell Biol 29: 4308-4324. PMCID: 2715808
  126. Young BA, Girard BM, Parsons RL (2008) Neurturin suppresses injury-induced neuronal activating transcription factor 3 expression in cultured guinea pig cardiac ganglia. J Comp Neurol 508: 795-805.
  127. Thornton TM, Pedraza-Alva G, Deng B, Wood CD, Aronshtam A, Clements JL, Sabio G, Davis RJ, Matthews DE, Doble B, Rincon M (2008) Phosphorylation by p38 MAPK as an alternative pathway for GSK3beta inactivation. Science 320: 667-670. PMCID: 2597039
  128. Previs MJ, VanBuren P, Begin KJ, Vigoreaux JO, LeWinter MM, Matthews DE (2008) Quantification of protein phosphorylation by liquid chromatography-mass spectrometry. Anal Chem 80: 5864-5872. PMCID: 3050605
  129. Miller MS, Lekkas P, Braddock JM, Farman GP, Ballif BA, Irving TC, Maughan DW, Vigoreaux JO (2008) Aging enhances indirect flight muscle fiber performance yet decreases flight ability in Drosophila. Biophys J 95: 2391-2401. PMCID: 2517049
  130. McCarthy SM, Bove PF, Matthews DE, Akaike T, van der Vliet A (2008) Nitric oxide regulation of MMP-9 activation and its relationship to modifications of the cysteine switch. Biochemistry 47: 5832-5840. PMCID: 3030771
  131. Gallant CV, Sedic M, Chicoine EA, Ruiz T, Mintz KP (2008) Membrane morphology and leukotoxin secretion are associated with a novel membrane protein of Aggregatibacter actinomycetemcomitans. J Bacteriol 190: 5972-5980. PMCID: 2519528
  132. Connors EC, Ballif BA, Morielli AD (2008) Homeostatic regulation of Kv1.2 potassium channel trafficking by cyclic AMP. J Biol Chem 283: 3445-3453.
  133. Ballif BA, Carey GR, Sunyaev SR, Gygi SP (2008) Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain. J Proteome Res 7: 311-318.
  134. Zappaterra MD, Lisgo SN, Lindsay S, Gygi SP, Walsh CA, Ballif BA (2007) A comparative proteomic analysis of human and rat embryonic cerebrospinal fluid. J Proteome Res 6: 3537-3548.
  135. Reynaert NL, van der Vliet A, Guala AS, McGovern T, Hristova M, Pantano C, Heintz NH, Heim J, Ho YS, Matthews DE, Wouters EF, Janssen-Heininger YM (2006) Dynamic redox control of NF-kappaB through glutaredoxin-regulated S-glutathionylation of inhibitory kappaB kinase beta. Proc Natl Acad Sci U S A 103: 13086-13091. PMCID: 1559757

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