Research

Publications (since 2006):

 

June 2012 – May 2013 (16)

 

    1. Previs, M. J., Beck Previs, S., Gulick, J., Robbins, J., and Warshaw, D. M. (2012) Molecular mechanics of cardiac myosin-binding protein C in native thick filaments. Science 337, 1215-1218
    2. Jabre, N. D., and Brewer, M. (2012) Stereoelectronic effects in the fragmentation of gamma-silyloxy-beta-hydroxy-alpha-diazocarbonyl compounds. The Journal of organic chemistry 77, 9910-9914
    3. Goswami, T., Li, X., Smith, A. M., Luderowski, E. M., Vincent, J. J., Rush, J., and Ballif, B. A. (2012) Comparative phosphoproteomic analysis of neonatal and adult murine brain. Proteomics 12, 2185-2189
    4. Valentine, M. S., Rajendran, A., Yano, J., Weeraratne, S. D., Beisson, J., Cohen, J., Koll, F., and Van Houten, J. (2012) Paramecium BBS genes are key to presence of channels in Cilia. Cilia 1, 16
    5. Yano, J., Rajendran, A., Valentine, M. S., Saha, M., Ballif, B. A., and Van Houten, J. L. (2013) Proteomic analysis of the cilia membrane of Paramecium tetraurelia. Journal of proteomics 78, 113-122
    6. Saha, M., Carriere, A., Cheerathodi, M., Zhang, X., Lavoie, G., Rush, J., Roux, P. P., and Ballif, B. A. (2012) RSK phosphorylates SOS1 creating 14-3-3-docking sites and negatively regulating MAPK activation. The Biochemical journal 447, 159-166
    7. Anjum, R., Pae, E., Blenis, J., and Ballif, B. A. (2012) TPCK inhibits AGC kinases by direct activation loop adduction at phenylalanine-directed cysteine residues. FEBS letters 586, 3471-3476
    8. Bior, B. K., and Ballif, B. A. (2013) Dab1 stabilizes its interaction with Cin85 by suppressing Cin85 phosphorylation at serine 587. FEBS letters 587, 60-66
    9. Bonenfant, N. R., Sokocevic, D., Wagner, D. E., Borg, Z. D., Lathrop, M. J., Lam, Y. W., Deng, B., Desarno, M. J., Ashikaga, T., Loi, R., and Weiss, D. J. (2013) The effects of storage and sterilization on de-cellularized and re-cellularized whole lung. Biomaterials 34:3231-45
    10. Sokocevic, D., Bonenfant, N. R., Wagner, D. E., Borg, Z. D., Lathrop, M. J., Lam, Y. W., Deng, B., Desarno, M. J., Ashikaga, T., Loi, R., Hoffman, A. M., and Weiss, D. J. (2013) The effect of age and emphysematous and fibrotic injury on the re-cellularization of de-cellularized lungs. Biomaterials 34:3256-69
    11. Syed, K., Porollo, A., Lam, Y. W., Grimmett, P. E., and Yadav, J. S. (2013) A catalytically versatile fungal P450 monooxygenase (CYP63A2) capable of oxidizing higher polycyclic aromatic hydrocarbons, alkylphenols, and alkanes. Applied and environmental microbiology 79:2692-702
    12. Tang, G., Ruiz, T., and Mintz, K. P. (2012) O-polysaccharide glycosylation is required for stability and function of the collagen adhesin EmaA of Aggregatibacter actinomycetemcomitans. Infection and immunity 80, 2868-2877
    13. Gotelli, N. J., Ellison, A. M., and Ballif, B. A. (2012) Environmental proteomics, biodiversity statistics and food-web structure. Trends in ecology & evolution 27, 436-442
    14. Krudysz-Amblo, J., Jennings, M.E. 2nd, Knight, T., Matthews, D.E., Mann, K.G., and Butenas, S.  (2013) Disulfide reduction abolishes tissue factor cofactor function. Biochim Biophys Acta. 1830, 3489-96
    15. Saison, C., Peyrard, T., Landre, C., Ballif, B.A., Schlosser, K.A., Dettori, I., Chicheportiche, C., Nemeth, P., Cartron, J.P., Arnaud, L. (2012) A new AQP1 null allele identified in a Gypsy woman who developed an anti-CO3 during her first pregnancy. Vox Sanguinus 103,137-44.
    16. Ballif, B.A., Helias, V., Peyrard, P., Menanteau, C., Saison, C., Lucien, N., Bourgouin, S., Le Gall, M., Cartron, J.P. and Arnaud, L. Disruption of SMIM1 defines the Vel− blood type. EMBO Molecular Medicine. 5:751-61

 

June 2011 – May 2012 (12)

 

    1. Cheerathodi, M., and Ballif, B. A. (2011) Identification of CrkL-SH3 binding proteins from embryonic murine brain: implications for Reelin signaling during brain development. Journal of proteome research 10, 4453-4462
    2. Gotelli, N. J., Smith, A. M., Ellison, A. M., and Ballif, B. A. (2011) Proteomic characterization of the major arthropod associates of the carnivorous pitcher plant Sarracenia purpurea. Proteomics 11, 2354-2358
    3. Palmer, B. M., Sadayappan, S., Wang, Y., Weith, A. E., Previs, M. J., Bekyarova, T., Irving, T. C., Robbins, J., and Maughan, D. W. (2011) Roles for cardiac MyBP-C in maintaining myofilament lattice rigidity and prolonging myosin cross-bridge lifetime. Biophysical journal 101, 1661-1669
    4. Spiess, P. C., Deng, B., Hondal, R. J., Matthews, D. E., and van der Vliet, A. (2011) Proteomic profiling of acrolein adducts in human lung epithelial cells. Journal of proteomics 74, 2380-2394
    5. Caldwell, G. B., Howe, A. K., Nickl, C. K., Dostmann, W. R., Ballif, B. A., and Deming, P. B. (2012) Direct modulation of the protein kinase A catalytic subunit alpha by growth factor receptor tyrosine kinases. Journal of cellular biochemistry 113, 39-48
    6. Daly, A. B., Wallis, J. M., Borg, Z. D., Bonvillain, R. W., Deng, B., Ballif, B. A., Jaworski, D. M., Allen, G. B., and Weiss, D. J. (2012) Initial binding and recellularization of decellularized mouse lung scaffolds with bone marrow-derived mesenchymal stromal cells. Tissue engineering. Part A 18, 1-16
    7. Helias, V., Saison, C., Ballif, B. A., Peyrard, T., Takahashi, J., Takahashi, H., Tanaka, M., Deybach, J. C., Puy, H., Le Gall, M., Sureau, C., Pham, B. N., Le Pennec, P. Y., Tani, Y., Cartron, J. P., and Arnaud, L. (2012) ABCB6 is dispensable for erythropoiesis and specifies the new blood group system Langereis. Nature genetics 44, 170-173
    8. Hristova, M., Spiess, P. C., Kasahara, D. I., Randall, M. J., Deng, B., and van der Vliet, A. (2012) The tobacco smoke component, acrolein, suppresses innate macrophage responses by direct alkylation of c-Jun N-terminal kinase. American journal of respiratory cell and molecular biology 46, 23-33
    9. Saison, C., Helias, V., Ballif, B. A., Peyrard, T., Puy, H., Miyazaki, T., Perrot, S., Vayssier-Taussat, M., Waldner, M., Le Pennec, P. Y., Cartron, J. P., and Arnaud, L. (2012) Null alleles of ABCG2 encoding the breast cancer resistance protein define the new blood group system Junior. Nature genetics 44, 174-177
    10. Tang, G., Kawai, T., Komatsuzawa, H., and Mintz, K. P. (2012) Lipopolysaccharides mediate leukotoxin secretion in Aggregatibacter actinomycetemcomitans. Molecular oral microbiology 27, 70-82
    11. Wallis, J. M., Borg, Z. D., Daly, A. B., Deng, B., Ballif, B. A., Allen, G. B., Jaworski, D. M., and Weiss, D. J. (2012) Comparative assessment of detergent-based protocols for mouse lung de-cellularization and re-cellularization. Tissue engineering. Part C, Methods 18, 420-432
    12. Weith, A., Sadayappan, S., Gulick, J., Previs, M. J., Vanburen, P., Robbins, J., and Warshaw, D. M. (2012) Unique single molecule binding of cardiac myosin binding protein-C to actin and phosphorylation-dependent inhibition of actomyosin motility requires 17 amino acids of the motif domain. Journal of molecular and cellular cardiology 52, 219-227

 

June 2010 – May 2011 (12)

 

    1. Buel, G. R., Rush, J., and Ballif, B. A. (2010) Fyn promotes phosphorylation of collapsin response mediator protein 1 at tyrosine 504, a novel, isoform-specific regulatory site. Journal of cellular biochemistry 111, 20-28
    2. Knowlton, M. L., Selfors, L. M., Wrobel, C. N., Gu, T. L., Ballif, B. A., Gygi, S. P., Polakiewicz, R., and Brugge, J. S. (2010) Profiling Y561-dependent and -independent substrates of CSF-1R in epithelial cells. PloS one 5, e13587
    3. Krudysz-Amblo, J., Jennings, M. E., 2nd, Mann, K. G., and Butenas, S. (2010) Carbohydrates and activity of natural and recombinant tissue factor. The Journal of biological chemistry 285, 3371-3382
    4. -Galbraith, R. H., Ohi, M. D., Ballif, B. A., Chen, J. S., McLeod, I., McDonald, W. H., Gygi, S. P., Yates, J. R., 3rd, and Gould, K. L. (2010) Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site. Molecular cell 39, 86-99
    5. Roskens, V. A., Carpenter, J. M., Pickett, K. M., and Ballif, B. A. (2010) Preservation of field samples for enzymatic and proteomic characterization: analysis of proteins from the trophallactic fluid of hornets and yellowjackets. Journal of proteome research 9, 5484-5491
    6. Rumora, A. E., Steere, A. N., Ramsey, J. E., Knapp, A. M., Ballif, B. A., and Kelm, R. J., Jr. (2010) Isolation and characterization of the core single-stranded DNA-binding domain of purine-rich element binding protein B (Purbeta). Biochemical and biophysical research communications 400, 340-345
    7. Schalm, S. S., Ballif, B. A., Buchanan, S. M., Phillips, G. R., and Maniatis, T. (2010) Phosphorylation of protocadherin proteins by the receptor tyrosine kinase Ret. Proceedings of the National Academy of Sciences of the United States of America 107, 13894-13899
    8. Mendoza, M. C., Er, E. E., Zhang, W., Ballif, B. A., Elliott, H. L., Danuser, G., and Blenis, J. (2011) ERK-MAPK drives lamellipodia protrusion by activating the WAVE2 regulatory complex. Molecular cell 41, 661-671
    9. Minajigi, A., Deng, B., and Francklyn, C. S. (2011) Fidelity escape by the unnatural amino acid beta-hydroxynorvaline: an efficient substrate for Escherichia coli threonyl-tRNA synthetase with toxic effects on growth. Biochemistry 50, 1101-1109
    10. Purmessur, D., Schek, R. M., Abbott, R. D., Ballif, B. A., Godburn, K. E., and Iatridis, J. C. (2011) Notochordal conditioned media from tissue increases proteoglycan accumulation and promotes a healthy nucleus pulposus phenotype in human mesenchymal stem cells. Arthritis research & therapy 13, R81
    11. Bokiej, M., Livermore, A. T., Harris, A. W., Onishi, A. C., and Sandwick, R. K. (2011) Ribose sugars generate internal glycation cross-links in horse heart myoglobin. Biochemical and biophysical research communications 407, 191-196
    12. Echeverria, P. C., Figueras, M. J., Vogler, M., Kriehuber, T., de Miguel, N., Deng, B., Dalmasso, M. C., Matthews, D. E., Matrajt, M., Haslbeck, M., Buchner, J., and Angel, S. O. (2010) The Hsp90 co-chaperone p23 of Toxoplasma gondii: Identification, functional analysis and dynamic interactome determination. Molecular and biochemical parasitology 172, 129-140

 

June 2009 – May 2010 (6)

 

    1. Acosta-Jaquez, H. A., Keller, J. A., Foster, K. G., Ekim, B., Soliman, G. A., Feener, E. P., Ballif, B. A., and Fingar, D. C. (2009) Site-specific mTOR phosphorylation promotes mTORC1-mediated signaling and cell growth. Molecular and cellular biology 29, 4308-4324
    2. Krudysz-Amblo, J., Parhami-Seren, B., Butenas, S., Brummel-Ziedins, K. E., Gomperts, E. D., Rivard, G. E., and Mann, K. G. (2009) Quantitation of anti-factor VIII antibodies in human plasma. Blood 113, 2587-2594
    3. Lechtreck, K. F., Johnson, E. C., Sakai, T., Cochran, D., Ballif, B. A., Rush, J., Pazour, G. J., Ikebe, M., and Witman, G. B. (2009) The Chlamydomonas reinhardtii BBSome is an IFT cargo required for export of specific signaling proteins from flagella. The Journal of cell biology 187, 1117-1132
    4. Foster, K. G., Acosta-Jaquez, H. A., Romeo, Y., Ekim, B., Soliman, G. A., Carriere, A., Roux, P. P., Ballif, B. A., and Fingar, D. C. (2010) Regulation of mTOR complex 1 (mTORC1) by raptor Ser863 and multisite phosphorylation. The Journal of biological chemistry 285, 80-94
    5. Heaslip, A. T., Leung, J. M., Carey, K. L., Catti, F., Warshaw, D. M., Westwood, N. J., Ballif, B. A., and Ward, G. E. (2010) A small-molecule inhibitor of T. gondii motility induces the posttranslational modification of myosin light chain-1 and inhibits myosin motor activity. PLoS pathogens 6, e1000720
    6. Tang, G., and Mintz, K. P. (2010) Glycosylation of the collagen adhesin EmaA of Aggregatibacter actinomycetemcomitans is dependent upon the lipopolysaccharide biosynthetic pathway. Journal of bacteriology 192, 1395-1404

 

June 2008 – May 2009 (3)

 

    1. Gallant, C. V., Sedic, M., Chicoine, E. A., Ruiz, T., and Mintz, K. P. (2008) Membrane morphology and leukotoxin secretion are associated with a novel membrane protein of Aggregatibacter actinomycetemcomitans. Journal of bacteriology 190, 5972-5980
    2. Miller, M. S., Lekkas, P., Braddock, J. M., Farman, G. P., Ballif, B. A., Irving, T. C., Maughan, D. W., and Vigoreaux, J. O. (2008) Aging enhances indirect flight muscle fiber performance yet decreases flight ability in Drosophila. Biophysical journal 95, 2391-2401
    3. Previs, M. J., VanBuren, P., Begin, K. J., Vigoreaux, J. O., LeWinter, M. M., and Matthews, D. E. (2008) Quantification of protein phosphorylation by liquid chromatography-mass spectrometry. Analytical chemistry 80, 5864-5872

 

June 2007 – May 2008 (6)

    1. Zappaterra, M. D., Lisgo, S. N., Lindsay, S., Gygi, S. P., Walsh, C. A., and Ballif, B. A. (2007) A comparative proteomic analysis of human and rat embryonic cerebrospinal fluid. Journal of proteome research 6, 3537-3548
    2. Ballif, B. A., Carey, G. R., Sunyaev, S. R., and Gygi, S. P. (2008) Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain. Journal of proteome research 7, 311-318
    3. Connors, E. C., Ballif, B. A., and Morielli, A. D. (2008) Homeostatic regulation of Kv1.2 potassium channel trafficking by cyclic AMP. The Journal of biological chemistry 283, 3445-3453
    4. McCarthy, S. M., Bove, P. F., Matthews, D. E., Akaike, T., and van der Vliet, A. (2008) Nitric oxide regulation of MMP-9 activation and its relationship to modifications of the cysteine switch. Biochemistry 47, 5832-5840
    5. Thornton, T. M., Pedraza-Alva, G., Deng, B., Wood, C. D., Aronshtam, A., Clements, J. L., Sabio, G., Davis, R. J., Matthews, D. E., Doble, B., and Rincon, M. (2008) Phosphorylation by p38 MAPK as an alternative pathway for GSK3beta inactivation. Science 320, 667-670
    6. Young, B. A., Girard, B. M., and Parsons, R. L. (2008) Neurturin suppresses injury-induced neuronal activating transcription factor 3 expression in cultured guinea pig cardiac ganglia. The Journal of comparative neurology 508, 795-805

2006 (1)

    1. Reynaert, N. L., van der Vliet, A., Guala, A. S., McGovern, T., Hristova, M., Pantano, C., Heintz, N. H., Heim, J., Ho, Y. S., Matthews, D. E., Wouters, E. F., and Janssen-Heininger, Y. M. (2006) Dynamic redox control of NF-kappaB through glutaredoxin-regulated S-glutathionylation of inhibitory kappaB kinase beta. Proceedings of the National Academy of Sciences of the United States of America 103, 13086-13091


 

 

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