Publications

Facility Supported Publications:

2014

  1. Tang Q, Andenmatten N, Triana MA, Deng B, Meissner M, Moreno SN, Ballif BA, Ward GE (2014) Calcium-dependent phosphorylation alters Class XIVa myosin function in the protozoan parasite Toxoplasma gondii. Mol Biol Cell. In press
  2. Leung JM, Tran F, Pathak RB, Poupart S, Heaslip AT, Ballif BA, Westwood NJ, Ward GE (2014) Identification of T. gondii Myosin Light Chain-1 as a Direct Target of TachypleginA-2, a Small-Molecule Inhibitor of Parasite Motility and Invasion. PLoS One 9: e98056.
  3. Rizzo AA, Suhanovsky MM, Baker ML, Fraser LC, Jones LM, Rempel DL, Gross ML, Chiu W, Alexandrescu AT, Teschke CM (2014) Multiple Functional Roles of the Accessory I-Domain of Bacteriophage P22 Coat Protein Revealed by NMR Structure and CryoEM Modeling. Structure 22: 830-841.
  4. Lopez-Camacho C, van Wijnen AJ, Lian JB, Stein JL, Stein GS (2014) Core Binding Factor beta (CBFbeta) Is Retained in the Midbody During Cytokinesis. J Cell Physiol 229: 1466-1474.
  5. Cherian S, Wai Lam Y, McDaniels I, Struziak M, Delay RJ (2014) Estradiol rapidly modulates odor responses in mouse vomeronasal sensory neurons. Neuroscience 269: 43-58.
  6. Hristova M, Veith C, Habibovic A, Lam YW, Deng B, Geiszt M, Janssen-Heininger YM, van der Vliet A (2014) Identification of DUOX1-dependent redox signaling through protein S-glutathionylation in airway epithelial cells. Redox Biol 2: 436-446.
  7. Wagner DE, Bonenfant NR, Sokocevic D, DeSarno MJ, Borg ZD, Parsons CS, Brooks EM, Platz JJ, Khalpey ZI, Hoganson DM, Deng B, Lam YW, Oldinski RA, Ashikaga T, Weiss DJ (2014) Three-dimensional scaffolds of acellular human and porcine lungs for high throughput studies of lung disease and regeneration. Biomaterials 35: 2664-2679.
  8. Wagner DE, Bonenfant NR, Parsons CS, Sokocevic D, Brooks EM, Borg ZD, Lathrop MJ, Wallis JD, Daly AB, Lam YW, Deng B, Desarno MJ, Ashikaga T, Loi R, Weiss DJ (2014) Comparative decellularization and recellularization of normal versus emphysematous human lungs. Biomaterials 35: 3281-3297.
  9. Picariello T, Valentine MS, Yano J, Van Houten J (2014) Reduction of meckelin leads to general loss of cilia, ciliary microtubule misalignment and distorted cell surface organization. Cilia 3: 2.
  10. Miller RW, Duncan AK, Schneebeli ST, Gray DL, Whalley AC (2014) Synthesis and structural data of tetrabenzo[8]circulene. Chemistry 20: 3705-3711.
  11. Jabre ND, Watanabe T, Brewer M (2014) Formal and total synthesis of (+/-)-cycloclavine. Tetrahedron Lett 56: 197-199.
  12. Angel SO, Figueras MJ, Alomar ML, Echeverria PC, Deng B (2014) Toxoplasma gondii Hsp90: potential roles in essential cellular processes of the parasite. Parasitology: 1-10.

2013

  1. Zhang Z, Giampa GM, Draghici C, Huang Q, Brewer M (2013) Synthesis of demissidine by a ring fragmentation 1,3-dipolar cycloaddition approach. Org Lett 15: 2100-2103.
  2. Yano J, Rajendran A, Valentine MS, Saha M, Ballif BA, Van Houten JL (2013) Proteomic analysis of the cilia membrane of Paramecium tetraurelia. J Proteomics 78: 113-122.
  3. Torde RG, Therrien AJ, Shortreed MR, Smith LM, Lamos SM (2013) Multiplexed analysis of cage and cage free chicken egg fatty acids using stable isotope labeling and mass spectrometry. Molecules 18: 14977-14988.
  4. Syed K, Porollo A, Lam YW, Grimmett PE, Yadav JS (2013) A catalytically versatile fungal P450 monooxygenase (CYP63A2) capable of oxidizing higher polycyclic aromatic hydrocarbons, alkylphenols, and alkanes. Appl Environ Microbiol.
  5. Suhanovsky MM, Teschke CM (2013) An intramolecular chaperone inserted in bacteriophage P22 coat protein mediates its chaperonin-independent folding. J Biol Chem 288: 33772-33783.
  6. Sokocevic D, Bonenfant NR, Wagner DE, Borg ZD, Lathrop MJ, Lam YW, Deng B, Desarno MJ, Ashikaga T, Loi R, Hoffman AM, Weiss DJ (2013) The effect of age and emphysematous and fibrotic injury on the re-cellularization of de-cellularized lungs. Biomaterials 34: 3256-3269.
  7. Purmessur D, Guterl CC, Cho SK, Cornejo MC, Lam YW, Ballif BA, Laudier JC, Iatridis JC (2013) Dynamic pressurization induces transition of notochordal cells to a mature phenotype while retaining production of important patterning ligands from development. Arthritis Res Ther 15: R122.
  8. Miller MS, Bedrin NG, Callahan DM, Previs MJ, Jennings ME, 2nd, Ades PA, Maughan DW, Palmer BM, Toth MJ (2013) Age-related slowing of myosin actin cross-bridge kinetics is sex specific and predicts decrements in whole skeletal muscle performance in humans. J Appl Physiol (1985) 115: 1004-1014.
  9. Krudysz-Amblo J, Jennings ME, 2nd, Knight T, Matthews DE, Mann KG, Butenas S (2013) Disulfide reduction abolishes tissue factor cofactor function. Biochim Biophys Acta 1830: 3489-3496.
  10. Klaus JP, Eisenhauer P, Russo J, Mason AB, Do D, King B, Taatjes D, Cornillez-Ty C, Boyson JE, Thali M, Zheng C, Liao L, Yates JR, 3rd, Zhang B, Ballif BA, Botten JW (2013) The intracellular cargo receptor ERGIC-53 is required for the production of infectious arenavirus, coronavirus, and filovirus particles. Cell Host Microbe 14: 522-534.
  11. Fellows A, Deng B, Mierke DF, Robey RB, Nichols RC (2013) Peptides modeled on the RGG domain of AUF1/hnRNP-D regulate 3' UTR-dependent gene expression. Int Immunopharmacol 17: 132-141.
  12. Choi S, Aljakna A, Srivastava U, Peterson BR, Deng B, Prat A, Korstanje R (2013) Decreased APOE-containing HDL subfractions and cholesterol efflux capacity of serum in mice lacking Pcsk9. Lipids Health Dis 12: 112.
  13. Cheng X, Waters SP (2013) Pyridone annulation via tandem Curtius rearrangement/6pi-electrocyclization: total synthesis of (-)-lyconadin C. Org Lett 15: 4226-4229.
  14. Bonenfant NR, Sokocevic D, Wagner DE, Borg ZD, Lathrop MJ, Lam YW, Deng B, Desarno MJ, Ashikaga T, Loi R, Weiss DJ (2013) The effects of storage and sterilization on de-cellularized and re-cellularized whole lung. Biomaterials 34: 3231-3245.
  15. Bior BK, Ballif BA (2013) Dab1 stabilizes its interaction with Cin85 by suppressing Cin85 phosphorylation at serine 587. FEBS Lett 587: 60-66.
  16. Bercovici DA, Ogilvie JM, Tsvetkov N, Brewer M (2013) Intramolecular polar [4( plus sign in circle)+2] cycloadditions of aryl-1-aza-2-azoniaallene salts: unprecedented reactivity leading to polycyclic protonated azomethine imines. Angew Chem Int Ed Engl 52: 13338-13341.
  17. Ballif BA, Helias V, Peyrard T, Menanteau C, Saison C, Lucien N, Bourgouin S, Le Gall M, Cartron JP, Arnaud L (2013) Disruption of SMIM1 causes the Vel- blood type. EMBO Mol Med 5: 751-761.
  18. Aten TM, Redmond MM, Weaver SO, Love CC, Joy RM, Lapp AS, Rivera OD, Hinkle KL, Ballif BA (2013) Tyrosine phosphorylation of the orphan receptor ESDN/DCBLD2 serves as a scaffold for the signaling adaptor CrkL. FEBS Lett 587: 2313-2318.
  19. Aranha Potter R, Bowser AM, Yang Y, Madalengoitia JS, Ziller JW (2013) Structure-reactivity relationships of zwitterionic 1,3-diaza-Claisen rearrangements. J Org Chem 78: 11772-11782.

2012

  1. Zhang A, Petrov KO, Hyun ER, Liu Z, Gerber SA, Myers LC (2012) The Tlo proteins are stoichiometric components of Candida albicans mediator anchored via the Med3 subunit. Eukaryot Cell 11: 874-884.
  2. Weith A, Sadayappan S, Gulick J, Previs MJ, Vanburen P, Robbins J, Warshaw DM (2012) Unique single molecule binding of cardiac myosin binding protein-C to actin and phosphorylation-dependent inhibition of actomyosin motility requires 17 amino acids of the motif domain. J Mol Cell Cardiol 52: 219-227.
  3. Wallis JM, Borg ZD, Daly AB, Deng B, Ballif BA, Allen GB, Jaworski DM, Weiss DJ (2012) Comparative assessment of detergent-based protocols for mouse lung de-cellularization and re-cellularization. Tissue Eng Part C Methods 18: 420-432.
  4. Valentine MS, Rajendran A, Yano J, Weeraratne SD, Beisson J, Cohen J, Koll F, Van Houten J (2012) Paramecium BBS genes are key to presence of channels in Cilia. Cilia 1: 16.
  5. Tang G, Ruiz T, Mintz KP (2012) O-polysaccharide glycosylation is required for stability and function of the collagen adhesin EmaA of Aggregatibacter actinomycetemcomitans. Infect Immun 80: 2868-2877.
  6. Tang G, Kawai T, Komatsuzawa H, Mintz KP (2012) Lipopolysaccharides mediate leukotoxin secretion in Aggregatibacter actinomycetemcomitans. Mol Oral Microbiol 27: 70-82.
  7. Saison C, Peyrard T, Landre C, Ballif BA, Schlosser KA, Dettori I, Chicheportiche C, Nemeth P, Cartron JP, Arnaud L (2012) A new AQP1 null allele identified in a Gypsy woman who developed an anti-CO3 during her first pregnancy. Vox Sang 103: 137-144.
  8. Saison C, Helias V, Ballif BA, Peyrard T, Puy H, Miyazaki T, Perrot S, Vayssier-Taussat M, Waldner M, Le Pennec PY, Cartron JP, Arnaud L (2012) Null alleles of ABCG2 encoding the breast cancer resistance protein define the new blood group system Junior. Nat Genet 44: 174-177.
  9. Saha M, Carriere A, Cheerathodi M, Zhang X, Lavoie G, Rush J, Roux PP, Ballif BA (2012) RSK phosphorylates SOS1 creating 14-3-3-docking sites and negatively regulating MAPK activation. Biochem J 447: 159-166.
  10. Previs MJ, Beck Previs S, Gulick J, Robbins J, Warshaw DM (2012) Molecular mechanics of cardiac myosin-binding protein C in native thick filaments. Science 337: 1215-1218.
  11. Jabre ND, Brewer M (2012) Stereoelectronic effects in the fragmentation of gamma-silyloxy-beta-hydroxy-alpha-diazocarbonyl compounds. J Org Chem 77: 9910-9914.
  12. Hristova M, Spiess PC, Kasahara DI, Randall MJ, Deng B, van der Vliet A (2012) The tobacco smoke component, acrolein, suppresses innate macrophage responses by direct alkylation of c-Jun N-terminal kinase. Am J Respir Cell Mol Biol 46: 23-33.
  13. Helias V, Saison C, Ballif BA, Peyrard T, Takahashi J, Takahashi H, Tanaka M, Deybach JC, Puy H, Le Gall M, Sureau C, Pham BN, Le Pennec PY, Tani Y, Cartron JP, Arnaud L (2012) ABCB6 is dispensable for erythropoiesis and specifies the new blood group system Langereis. Nat Genet 44: 170-173.
  14. Gotelli NJ, Ellison AM, Ballif BA (2012) Environmental proteomics, biodiversity statistics and food-web structure. Trends Ecol Evol 27: 436-442.
  15. Goswami T, Li X, Smith AM, Luderowski EM, Vincent JJ, Rush J, Ballif BA (2012) Comparative phosphoproteomic analysis of neonatal and adult murine brain. Proteomics 12: 2185-2189.
  16. Daly AB, Wallis JM, Borg ZD, Bonvillain RW, Deng B, Ballif BA, Jaworski DM, Allen GB, Weiss DJ (2012) Initial binding and recellularization of decellularized mouse lung scaffolds with bone marrow-derived mesenchymal stromal cells. Tissue Eng Part A 18: 1-16.
  17. Caldwell GB, Howe AK, Nickl CK, Dostmann WR, Ballif BA, Deming PB (2012) Direct modulation of the protein kinase A catalytic subunit alpha by growth factor receptor tyrosine kinases. J Cell Biochem 113: 39-48.
  18. Anjum R, Pae E, Blenis J, Ballif BA (2012) TPCK inhibits AGC kinases by direct activation loop adduction at phenylalanine-directed cysteine residues. FEBS Lett 586: 3471-3476.

2011

  1. Spiess PC, Deng B, Hondal RJ, Matthews DE, van der Vliet A (2011) Proteomic profiling of acrolein adducts in human lung epithelial cells. J Proteomics 74: 2380-2394.
  2. Purmessur D, Schek RM, Abbott RD, Ballif BA, Godburn KE, Iatridis JC (2011) Notochordal conditioned media from tissue increases proteoglycan accumulation and promotes a healthy nucleus pulposus phenotype in human mesenchymal stem cells. Arthritis Res Ther 13: R81.
  3. Palmer BM, Sadayappan S, Wang Y, Weith AE, Previs MJ, Bekyarova T, Irving TC, Robbins J, Maughan DW (2011) Roles for cardiac MyBP-C in maintaining myofilament lattice rigidity and prolonging myosin cross-bridge lifetime. Biophys J 101: 1661-1669.
  4. Minajigi A, Deng B, Francklyn CS (2011) Fidelity escape by the unnatural amino acid beta-hydroxynorvaline: an efficient substrate for Escherichia coli threonyl-tRNA synthetase with toxic effects on growth. Biochemistry 50: 1101-1109.
  5. Mendoza MC, Er EE, Zhang W, Ballif BA, Elliott HL, Danuser G, Blenis J (2011) ERK-MAPK drives lamellipodia protrusion by activating the WAVE2 regulatory complex. Mol Cell 41: 661-671.
  6. Gotelli NJ, Smith AM, Ellison AM, Ballif BA (2011) Proteomic characterization of the major arthropod associates of the carnivorous pitcher plant Sarracenia purpurea. Proteomics 11: 2354-2358.
  7. Cheerathodi M, Ballif BA (2011) Identification of CrkL-SH3 binding proteins from embryonic murine brain: implications for Reelin signaling during brain development. J Proteome Res 10: 4453-4462.
  8. Bokiej M, Livermore AT, Harris AW, Onishi AC, Sandwick RK (2011) Ribose sugars generate internal glycation cross-links in horse heart myoglobin. Biochem Biophys Res Commun 407: 191-196.

2010

  1. Tang G, Mintz KP (2010) Glycosylation of the collagen adhesin EmaA of Aggregatibacter actinomycetemcomitans is dependent upon the lipopolysaccharide biosynthetic pathway. J Bacteriol 192: 1395-1404.
  2. Schalm SS, Ballif BA, Buchanan SM, Phillips GR, Maniatis T (2010) Phosphorylation of protocadherin proteins by the receptor tyrosine kinase Ret. Proc Natl Acad Sci U S A 107: 13894-13899.
  3. Rumora AE, Steere AN, Ramsey JE, Knapp AM, Ballif BA, Kelm RJ, Jr. (2010) Isolation and characterization of the core single-stranded DNA-binding domain of purine-rich element binding protein B (Purbeta). Biochem Biophys Res Commun 400: 340-345.
  4. Roskens VA, Carpenter JM, Pickett KM, Ballif BA (2010) Preservation of field samples for enzymatic and proteomic characterization: analysis of proteins from the trophallactic fluid of hornets and yellowjackets. J Proteome Res 9: 5484-5491.
  5. Roberts-Galbraith RH, Ohi MD, Ballif BA, Chen JS, McLeod I, McDonald WH, Gygi SP, Yates JR, 3rd, Gould KL (2010) Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site. Mol Cell 39: 86-99.
  6. Krudysz-Amblo J, Jennings ME, 2nd, Mann KG, Butenas S (2010) Carbohydrates and activity of natural and recombinant tissue factor. J Biol Chem 285: 3371-3382.
  7. Knowlton ML, Selfors LM, Wrobel CN, Gu TL, Ballif BA, Gygi SP, Polakiewicz R, Brugge JS (2010) Profiling Y561-dependent and -independent substrates of CSF-1R in epithelial cells. PLoS One 5: e13587.
  8. Heaslip AT, Leung JM, Carey KL, Catti F, Warshaw DM, Westwood NJ, Ballif BA, Ward GE (2010) A small-molecule inhibitor of T. gondii motility induces the posttranslational modification of myosin light chain-1 and inhibits myosin motor activity. PLoS Pathog 6: e1000720.
  9. Foster KG, Acosta-Jaquez HA, Romeo Y, Ekim B, Soliman GA, Carriere A, Roux PP, Ballif BA, Fingar DC (2010) Regulation of mTOR complex 1 (mTORC1) by raptor Ser863 and multisite phosphorylation. J Biol Chem 285: 80-94.
  10. Echeverria PC, Figueras MJ, Vogler M, Kriehuber T, de Miguel N, Deng B, Dalmasso MC, Matthews DE, Matrajt M, Haslbeck M, Buchner J, Angel SO (2010) The Hsp90 co-chaperone p23 of Toxoplasma gondii: Identification, functional analysis and dynamic interactome determination. Mol Biochem Parasitol 172: 129-140.
  11. Buel GR, Rush J, Ballif BA (2010) Fyn promotes phosphorylation of collapsin response mediator protein 1 at tyrosine 504, a novel, isoform-specific regulatory site. J Cell Biochem 111: 20-28.

2009

  1. Lechtreck KF, Johnson EC, Sakai T, Cochran D, Ballif BA, Rush J, Pazour GJ, Ikebe M, Witman GB (2009) The Chlamydomonas reinhardtii BBSome is an IFT cargo required for export of specific signaling proteins from flagella. J Cell Biol 187: 1117-1132.
  2. Krudysz-Amblo J, Parhami-Seren B, Butenas S, Brummel-Ziedins KE, Gomperts ED, Rivard GE, Mann KG (2009) Quantitation of anti-factor VIII antibodies in human plasma. Blood 113: 2587-2594.
  3. Acosta-Jaquez HA, Keller JA, Foster KG, Ekim B, Soliman GA, Feener EP, Ballif BA, Fingar DC (2009) Site-specific mTOR phosphorylation promotes mTORC1-mediated signaling and cell growth. Mol Cell Biol 29: 4308-4324.

2008

  1. Young BA, Girard BM, Parsons RL (2008) Neurturin suppresses injury-induced neuronal activating transcription factor 3 expression in cultured guinea pig cardiac ganglia. J Comp Neurol 508: 795-805.
  2. Thornton TM, Pedraza-Alva G, Deng B, Wood CD, Aronshtam A, Clements JL, Sabio G, Davis RJ, Matthews DE, Doble B, Rincon M (2008) Phosphorylation by p38 MAPK as an alternative pathway for GSK3beta inactivation. Science 320: 667-670.
  3. Previs MJ, VanBuren P, Begin KJ, Vigoreaux JO, LeWinter MM, Matthews DE (2008) Quantification of protein phosphorylation by liquid chromatography-mass spectrometry. Anal Chem 80: 5864-5872.
  4. Miller MS, Lekkas P, Braddock JM, Farman GP, Ballif BA, Irving TC, Maughan DW, Vigoreaux JO (2008) Aging enhances indirect flight muscle fiber performance yet decreases flight ability in Drosophila. Biophys J 95: 2391-2401.
  5. McCarthy SM, Bove PF, Matthews DE, Akaike T, van der Vliet A (2008) Nitric oxide regulation of MMP-9 activation and its relationship to modifications of the cysteine switch. Biochemistry 47: 5832-5840.
  6. Gallant CV, Sedic M, Chicoine EA, Ruiz T, Mintz KP (2008) Membrane morphology and leukotoxin secretion are associated with a novel membrane protein of Aggregatibacter actinomycetemcomitans. J Bacteriol 190: 5972-5980.
  7. Connors EC, Ballif BA, Morielli AD (2008) Homeostatic regulation of Kv1.2 potassium channel trafficking by cyclic AMP. J Biol Chem 283: 3445-3453.
  8. Ballif BA, Carey GR, Sunyaev SR, Gygi SP (2008) Large-scale identification and evolution indexing of tyrosine phosphorylation sites from murine brain. J Proteome Res 7: 311-318.

2007

  1. Zappaterra MD, Lisgo SN, Lindsay S, Gygi SP, Walsh CA, Ballif BA (2007) A comparative proteomic analysis of human and rat embryonic cerebrospinal fluid. J Proteome Res 6: 3537-3548.

2006

  1. Reynaert NL, van der Vliet A, Guala AS, McGovern T, Hristova M, Pantano C, Heintz NH, Heim J, Ho YS, Matthews DE, Wouters EF, Janssen-Heininger YM (2006) Dynamic redox control of NF-kappaB through glutaredoxin-regulated S-glutathionylation of inhibitory kappaB kinase beta. Proc Natl Acad Sci U S A 103: 13086-13091.

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